Software

An initial list of SBI-related software packages

SBI (python) - general purpose SBI framework
SBI Benchmarking (python) - for benchmarking
MadMiner - aimed at particle physics
swyft (python) the reference implementation of Truncated Marginal Neural Ratio Estimation (TMNRE), an efficient, simulation-based inference technique for complex data and expensive simulators
carl an early NN-based SBI package
lampe (python) is a flexible, amortized sbi library. The philosophy of LAMPE is to avoid obfuscation and expose all components so it is most useful for researchers.
pydelfi (python) with neural density estimators and adaptive acquisition of simulations.

Latest Posts

Biophysical Modeling and Experimental Analysis of the Dynamics of C. elegans Body-Wall Muscle Cells

X Du, J Crodelle, VJ Barranca, S Li, Y Shi, S Gao… - bioRxiv, 2024 - biorxiv.org

… To determine the free parameters of the model, we develop a simulation-based inference method with parallel sampling that aligns the model with the muscle cells’ …

Optimal Neural Summarisation for Full-Field Weak Lensing Cosmological Implicit Inference

D Lanzieri, J Zeghal, TL Makinen, A Boucaud… - arXiv preprint arXiv …, 2024 - arxiv.org

… case at the cost of requiring a Simulation-Based Inference approach. In both cases, … , at fixed neural architecture and Simulation-Based Inference pipeline. To achieve this, …

Comparing AI versus Optimization Workflows for Simulation-Based Inference of Spatial-Stochastic Systems

MA Ramirez-Sierra, TR Sokolowski - arXiv preprint arXiv:2407.10938, 2024 - arxiv.org

… Recently, modern deep-learning techniques have been integrated with simulation-based inference, creating an exciting new approach for estimating parameters of such …

Simulation-based Inference on Virtual Brain Models of Disorders

M Hashemi, A Ziaeemehr, MM Woodman… - Machine Learning …, 2024 - iopscience.iop.org

… Simulation-based inference 207 The key challenge to perform an efficient Bayesian … Simulation-based Inference (SBI) 216 or likelihood-free inference performs efficient …